PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022398
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 729aa    MW: 79127.8 Da    PI: 6.4069
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022398genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.9e-08306326526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ GtC++Gd C +aHg
  DCAR_022398 306 PCPDFRK-GTCRRGDMCEYAHG 326
                  8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.26E-1539158IPR020683Ankyrin repeat-containing domain
PfamPF127963.4E-976151IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.58482158IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.3E-1682162IPR020683Ankyrin repeat-containing domain
CDDcd002044.31E-1282160No hitNo description
SMARTSM002480.004582112IPR002110Ankyrin repeat
PROSITE profilePS5008810.472117152IPR002110Ankyrin repeat
SMARTSM002480.0063117149IPR002110Ankyrin repeat
SMARTSM003563.1E-6301327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4306328IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-5306326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5334364IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.343336360IPR000571Zinc finger, CCCH-type
SMARTSM0035616336359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MCGVTKSTST SSTQSNGESK SDKQNMGPLT VETEETFSNL LEFAANNDFE AFKASVEENS  60
LAIDEVGLWY VRKKGSKQIV LEHRTPLMVA ATYGSLDVIK FIISQPSVDV NLACGPDKCT  120
ALHCSASGGS VNAVDVVKLL LGVGADPHIK DANGQRAVDV IVAPPKVLNV KASLEEMLLG  180
SVSDGSVEEC KLRVSISSSS YSPSLSSSPD NGSPCSPSDL VSSPMLSKFT DVPNGAISEK  240
KEYPVDPSLP DIKNSIYSTD EFRMFSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGTCRRGDM CEYAHGVFEC WLHPAQYRTR LCKDVTSCDR RVCFFAHTPE  360
ELRPLYVSTG SAVPSPRSSA SAASVMDMAV AMNLLPGSPS SASMMSPSAF NQPMSPSGNG  420
AHSSLAWPQP NVPTLHLPGS NMQSSRLRSS LSARDIPPED LQLLQDMDAH QLLLNDLACL  480
SQSRPSPVSL SRSGRPKTLT PSNLEDLFSA ELASSPRYSD QMASASAFSP SHRSAVFNQF  540
QQQQNMLSPI NTNVFSPKNA DHPLLQASYS VSSPGRMSPR TVDPISPMGS RQTAFAQREF  600
QQPQQMRCLS SRDLSTNNVS MVGSQVNSWS KWSSPSGIVD WSVKGDEHSW LPRSSSNDLN  660
KNTEEPDISW VQSLVKESPP EMKDKLPASV ASAAPSGEGL KSNPQAESVD HTVLAAWIEQ  720
MQLDRLSV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799603.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A068UH580.0A0A068UH58_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000175450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain